combineICG#

Last Updated: Jan 29, 2024

Description#

Combine ICF scores in a pairwise manner.

combineICG(...)

...

Arguments passed on to combineICF

icfObject: ICF (interaction changed feat) score object
selected_ints: subset of selected cell-cell interactions (optional)
selected_feats: subset of selected Feats (optional)
specific_feats_1: specific Featset combo (need to position match specific_genes_2)
specific_feats_2: specific Featset combo (need to position match specific_genes_1)
min_cells: minimum number of target cell type
min_int_cells: minimum number of interacting cell type
min_fdr: minimum adjusted p-value
min_spat_diff: minimum absolute spatial expression difference
min_log2_fc: minimum absolute log2 fold-change
do_parallel: run calculations in parallel with mclapply
verbose: verbose