Convert anndata to Giotto#

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Last Updated: Mar 11, 2023

Description#

Converts a spatial anndata (e.g. scanpy) .h5ad file into a Giotto object

Usage#

anndataToGiotto(anndata_path = NULL, python_path = NULL)

Arguments#

anndata_path

path to the .h5ad file

python_path

path to python executable within a conda/miniconda environment

Details#

Function in beta. Converts a .h5ad file into a Giotto object. The returned Giotto Object will take default insructions with the exception of the python path, which may be customized. See changeGiottoInstructions to modify instructions after creation.

Value#

Giotto object