Convert anndata to Giotto#

Last Updated: Jan 29, 2024

Description#

Converts a spatial anndata (e.g. scanpy) .h5ad file into a Giotto object

Usage#

anndataToGiotto(anndata_path = NULL, python_path = NULL)

Arguments#

`anndata_path`	path to the .h5ad file
`python_path`	path to python executable within a conda/miniconda environment

Details#

Function in beta. Converts a .h5ad file into a Giotto object. The returned Giotto Object will take default insructions with the exception of the python path, which may be customized. See changeGiottoInstructions to modify instructions after creation.

Value#

Giotto object